rliger: plotGenes – R documentation

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plotGenes

Plot expression of multiple genes

Description

Uses plotGene to plot each gene (and dataset) on a separate page. It is recommended to call this function into a PDF due to the large number of plots produced.

Usage

plotGenes(object, genes, ...)

Arguments

`object`	`liger` object. Should call runTSNE before calling.
`genes`	Vector of gene names.
`...`	arguments passed from `plotGene`

Value

If returning single plot, returns ggplot object; if returning multiple plots; returns list of ggplot objects.

Examples

## Not run: 
# ligerex (liger object), factorization complete input
ligerex <- runTSNE(ligerex)
# plot expression for CD4 and FCGR3A
# pdf("gene_plots.pdf")
plotGenes(ligerex, c("CD4", "FCGR3A"))
# dev.off()

## End(Not run)

rliger

Linked Inference of Genomic Experimental Relationships

v1.0.0

GPL-3

Authors

Joshua Welch [aut, ctb], Chao Gao [aut, ctb, cre], Jialin Liu [aut, ctb], Joshua Sodicoff [aut, ctb], Velina Kozareva [aut, ctb], Evan Macosko [aut, ctb], Paul Hoffman [ctb], Ilya Korsunsky [ctb], Robert Lee [ctb]

Initial release

2021-04-18