Perform Wilcoxon rank-sum test
Perform Wilcoxon rank-sum tests on specified dataset using given method.
runWilcoxon(object, data.use = "all", compare.method)
object |
|
data.use |
This selects which dataset(s) to use. (default 'all') |
compare.method |
This indicates the metric of the test. Either 'clusters' or 'datasets'. |
A 10-columns data.frame with test results.
## Not run: # ligerex (liger object based on in-memory datasets), factorization complete wilcox.results <- runWilcoxon(ligerex, compare.method = "cluster") wilcox.results <- runWilcoxon(ligerex, compare.method = "datastes", data.use = c(1, 2)) # HDF5 input # ligerex (liger object based on datasets in HDF5 format), factorization complete # Need to sample cells before implementing Wilcoxon test ligerex <- readSubset(ligerex, slot.use = "norm.data", max.cells = 1000) de_genes <- runWilcoxon(ligerex, compare.method = "clusters") ## End(Not run)
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