sccore: appendSpecificityMetricsToDE – R documentation

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appendSpecificityMetricsToDE

Append specificity metrics to DE

Append specificity metrics to DE

appendSpecificityMetricsToDE(
  de.df,
  clusters,
  cluster.id,
  p2.counts,
  low.expression.threshold = 0,
  append.auc = FALSE
)

`de.df`	data.frame of differential expression values
`clusters`	factor of clusters
`cluster.id`	names of 'clusters' factor. If a cluster.id doesn't exist in cluster names, an error is thrown.
`p2.counts`	counts from Pagoda2, refer to <https://github.com/kharchenkolab/pagoda2>
`low.expression.threshold`	numeric Threshold to remove expression values (default=0). Values under this threshold are discarded.
`append.auc`	boolean If TRUE, append AUC values (default=FALSE)

data.frame of differential expression values with metrics attached

Core Utilities for Single-Cell RNA-Seq

v0.1.3

GPL-3

Authors

Viktor Petukhov [aut], Ramus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre]

Initial release