Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

Core Utilities for Single-Cell RNA-Seq

package-ubuntu-20.04-r-4.0.5#cran#sccore-0.1.3

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package-ubuntu-20.04-r-4.0.5#cran#sccore-0.1.3#docs#cellAnnotations

cellAnnotations

Description

Usage

Format

sccore

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