sccore: collapseGraphSum – R documentation

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collapseGraphSum

Collapse Graph By Sum

Collapse Graph By Sum

collapseGraphSum(graph, groups, normalize = TRUE)

`graph`	igraph graph object Graph to be collapsed
`groups`	factor on vertices describing cluster assignment (can specify integer vertex ids, or character vertex names which will be matched)
`normalize`	boolean Whether to recalculate edge weight as observed/expected (default=TRUE)

collapsed graph

collapsed = collapseGraphPaga(conosGraph, igraph::V(conosGraph), linearize=TRUE, winsorize=FALSE)

Core Utilities for Single-Cell RNA-Seq

v0.1.3

GPL-3

Authors

Viktor Petukhov [aut], Ramus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre]

Initial release