sccore: propagateLabelsSolver – R documentation

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propagateLabelsSolver

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" <http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf>

Description

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" <http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf>

Usage

propagateLabelsSolver(graph, labels, solver = "mumps")

Arguments

`graph`	igraph graph object Graph input
`labels`	vector of factor or character labels, named by cell names
`solver`	Method of solver to use (default="mumps"), either "Matrix" or "mumps" (i.e. "rmumps::Rmumps")

Value

result from Matrix::solve() or rmumps::Rmumps

Examples

propagateLabelsSolver(conosGraph, labels=cellAnnotations)

sccore

Core Utilities for Single-Cell RNA-Seq

v0.1.3

GPL-3

Authors

Viktor Petukhov [aut], Ramus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre]

Initial release