seqinr: prettyseq – R documentation

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prettyseq

Text representation of a sequence from an ACNUC server

Description

To get a text representation of sequence of rank num and of its subsequences, with bpl bases per line (default = 60), and with optional translation of protein-coding subsequences

Usage

prettyseq(num, bpl = 60, translate = TRUE, socket = autosocket())

Arguments

`num`	rank of the sequence in the ACNUC database
`bpl`	number of base per line
`translate`	should coding sequences be translated?
`socket`	an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database).

Value

An invisible vector of string. The output is redirected to the console.

Author(s)

J.R. Lobry

References

http://doua.prabi.fr/databases/acnuc.html

citation("seqinr")

Examples

## Not run:  
  ### Need internet connection
  choosebank("emblTP")
  prettyseq(111)
  
## End(Not run)

seqinr

Biological Sequences Retrieval and Analysis

v4.2-16

GPL (>= 2)

Authors

Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb]

Initial release

2022-05-19