Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.

Pedigree Inference from SNPs

package-ubuntu-20.04-r-4.0.5#cran#sequoia-2.3.3

<p>Morph pedigree into a <span class="pkg">kinship2</span> compatible format and use
<code><a href="../../kinship2/html/kinship.html">kinship</a></code> to calculate kinship coefficients;
relatedness = 2*kinship.
</p>

<table summary="R argblock">
<tr valign="top">
<td><code>Pedigree</code></td>
<td>
<p>dataframe with columns id-dam-sire.</p>
</td>
</tr>
<tr valign="top">
<td><code>OUT</code></td>
<td>
<p>desired output format, 'M' for matrix or 'DF' for dataframe with
columns IID1 - IID2 - R.ped.</p>
</td>
</tr>
</table>

package-ubuntu-20.04-r-4.0.5#cran#sequoia-2.3.3#docs#CalcRped

CalcRped

Description

Usage

Arguments

Value

sequoia

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`Pedigree`	dataframe with columns id-dam-sire.
`OUT`	desired output format, 'M' for matrix or 'DF' for dataframe with columns IID1 - IID2 - R.ped.