sequoia: GetDummifiable – R documentation

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GetDummifiable

Dummifiable IDs

Get the dummifiable individuals, using various possible criteria

GetDummifiable(Pedigree, gID, minSibSize)

Pedigree

dataframe with id - dam - sire.

gID

vector with IDs of SNP-genotyped individuals.

minSibSize

minimum requirements to be considered dummifiable:

'1sib' : sibship of size 1, with or without grandparents. The latter aren't really a sibship, but can be useful in some situations.
'1sib1GP': sibship of size 1 with at least 1 grandparent
'2sib': at least 2 siblings, with or without grandparents. Used by PedCompare

values of minSibSize used by calling functions

A length-2 list (dams, sires) with each element a vector with dummifiable ids

Pedigree Inference from SNPs

v2.3.3

GPL-2

Authors

Jisca Huisman [aut, cre]

Initial release

2021-04-30