sequoia: SeqOUT_griffin – R documentation

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SeqOUT_griffin

Example sequoia output (griffins)

Description

Example output of a sequoia run including sibship clustering, based on the griffin pedigree.

Usage

data(SeqOUT_griffin)

Format

a list, see sequoia

Author(s)

Jisca Huisman, jisca.huisman@gmail.com

Examples

## Not run: 
GenoS <- SimGeno(Ped.griffin, nSnp=400, ParMis=0.4)
griffin.sex <- sapply(as.character(Ped_griffin$id), function(x)
                      substr(x, start=nchar(x), stop=nchar(x)))
LH.griffin <- data.frame(ID = Ped_griffin$id,
                         Sex = ifelse(griffin.sex=="F", 1, 2),
                         BirthYear = Ped_griffin$birthyear)
SeqOUT.GX <- sequoia(GenoS, LH.griffin,
                     Module = "ped",
                     args.AP = list(Smooth = FALSE))

## End(Not run)

sequoia

Pedigree Inference from SNPs

v2.3.3

GPL-2

Authors

Jisca Huisman [aut, cre]

Initial release

2021-04-30