sequoia: DyadCompare – R documentation

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DyadCompare

Compare Dyads

Description

Count the number of half and full sibling pairs correctly and incorrectly assigned. DEPRECATED - PLEASE USE ComparePairs

Usage

DyadCompare(Ped1 = NULL, Ped2 = NULL, na1 = c(NA, "0"))

Arguments

`Ped1`	original pedigree, dataframe with 3 columns: id-dam-sire.
`Ped2`	second (inferred) pedigree.
`na1`	the value for missing parents in Ped1.

Value

A 3x3 table with the number of pairs assigned as full siblings (FS), half siblings (HS) or unrelated (U, including otherwise related) in the two pedigrees, with the classification in Ped1 on rows and that in Ped2 in columns.

Examples

data(Ped_HSg5, SimGeno_example, LH_HSg5, package="sequoia")
SeqOUT <- sequoia(GenoM = SimGeno_example, LifeHistData = LH_HSg5,
                  Module="par", quiet=TRUE, Plot=FALSE)
DyadCompare(Ped1=Ped_HSg5, Ped2=SeqOUT$Pedigree)

sequoia

Pedigree Inference from SNPs

v2.3.3

GPL-2

Authors

Jisca Huisman [aut, cre]

Initial release

2021-04-30