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GetLLRAge

LLR-age from Ageprior Matrix

Description

Get log10-likelihood ratios for a specific age difference from matrix AgePriorExtra.

Usage

GetLLRAge(AgePriorExtra, agedif, patmat)

Arguments

AgePriorExtra

matrix in sequoia output
agedif

vector with age differences, in whole numbers. Must occur in rownames of AgePriorExtra.
patmat

numeric vector; choose maternal (1), paternal (2) relatives, or for each relationship the most-likely alternative (3).

Value

A matrix with nrow equal to the length of agedif, and 7 columns: PO-FS-HS-GP-FA-HA-U.

Examples

data(SeqOUT_griffin, package="sequoia")
PairsG <- data.frame(ID1="i122_2007_M",
                     ID2 = c("i124_2007_M", "i042_2003_F", "i083_2005_M"),
                     AgeDif = c(0,4,2))
cbind(PairsG,
      GetLLRAge(SeqOUT_griffin$AgePriorExtra,
                agedif = PairsG$AgeDif, patmat=rep(2,3)))
sequoia

Pedigree Inference from SNPs

v2.3.3
GPL-2
Authors
Jisca Huisman [aut, cre]
Initial release
2021-04-30

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