Scatter Plot of Pair LLRs
Plot LLR(rely/U) against LLR(relx/U), for one combination of relationships, colour coded by fcl & top.
LLRplot(relx, rely, LLRU, fcl, top, RelCol, bgcol, Tassign = 0.5, Tfilter = -2)
relx |
relationship to plot on the x-axis. One of 'PO', 'FS', 'HS', 'GP', 'FA', or 'HA'. |
rely |
relationship to plot on the y-axis; as |
LLRU |
matrix with log10-likelihoods, already scaled by LL(U) for each pair. |
fcl |
focal relationship, sets outer circle colour of points. |
top |
most likely relationship, sets inner filling colour of points. |
RelCol |
named character vector with colours to use per relationship. |
bgcol |
do background colour TRUE/FALSE. |
Tassign |
assignment threshold, shown as grey square in bottom-left corner and band along the diagonal. |
Tfilter |
filter threshold, shown as dark grey square in bottom-left. |
The background of the plot is coloured to match relx (bottom
triangle) and rely (upper triangle).
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