sequoia: PlotAgePrior – R documentation

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PlotAgePrior

Plot Age Priors

Visualise the age-difference based prior probability ratios as a heatmap.

PlotAgePrior(AP = NULL, legend = TRUE)

`AP`	matrix with age priors (P(A\|R)/P(A)) with age differences in rows and relationships in columns; by default M: maternal parent (mother), P: paternal parent (father), FS: full siblings, MS: maternal siblings (full + half), PS: paternal siblings.
`legend`	if `TRUE`, a new plotting window is started and `layout` is used to plot a legend next to the main plot. Set to `FALSE` if you want to add it as panel to an existing plot (e.g. with `par(mfcol=c(2,2))`).

A heatmap.

data(SeqOUT_griffin, package="sequoia")
PlotAgePrior(SeqOUT_griffin$AgePriors)
PlotAgePrior(SeqOUT_griffin$AgePriorExtra)

Pedigree Inference from SNPs

v2.3.3

GPL-2

Authors

Jisca Huisman [aut, cre]

Initial release

2021-04-30