sequoia: PlotPedComp – R documentation

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PlotPedComp

Visualise PedCompare Output

Description

square Venn diagrams with PedCompare Counts.

Usage

PlotPedComp(Counts, sameSize = FALSE)

Arguments

`Counts`	a 7x5x2 array with counts of matches and mismatches per category (genotyped vs dummy), as returned by `PedCompare`.
`sameSize`	logical, make all per-category Venn diagrams the same size `TRUE`, or make their size proportional to the counts (`FALSE`, the default). If `TRUE`, a warning is printed at the bottom.

Examples

data(SeqOUT_griffin, FieldMums_griffin, package="sequoia")
PC.g <- PedCompare(Ped1 = cbind(FieldMums_griffin, sire=NA),
                   Ped2 = SeqOUT_griffin$Pedigree)
PlotPedComp(PC.g$Counts)

sequoia

Pedigree Inference from SNPs

v2.3.3

GPL-2

Authors

Jisca Huisman [aut, cre]

Initial release

2021-04-30