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sigclust-class

Class sigclust


Description

The class sigclust is the output from the function sigclust. It is also the input to the plot function plot-methods.

Slots

raw.data:

raw data matrix.

veigval:

vector of sample eigen values.

vsimeigval:

vector of eigen values used in simulation

simbackvar:

background variance fit from the data.

icovest:

covariance estimation type.

nsim:

number of simulated Gaussian samples.

simcindex:

vector of cluster indices based on nsim simulated data sets.

pval:

simulated sigclust p-value based on empiriccal quantiles.

pvalnorm:

simulated sigclust p-value based on Gaussian quantiles.

xcindex:

cluster index based on given data set.

Author(s)

Hanwen Huang: hanwenh@email.unc.edu; Yufeng Liu: yfliu@email.unc.edu; J. S. Marron: marron@email.unc.edu

See Also


sigclust

Statistical Significance of Clustering

v1.1.0
GPL (>= 2)
Authors
Hanwen Huang, Yufeng Liu & J. S. Marron
Initial release

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