snpStats: convert.snpMatrix – R documentation

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convert.snpMatrix

Convert snpMatrix objects to snpStats objects

Description

These functions convert snpMatrix objects to snpStats objects. convert.snpMatrix converts a single object, while convert.snpMatrix.dir converts all stored elements in a specified directory. They really only change the class names since most of the classes in snpStats are backwards-compatible with snpMatrix. The exception is the ImputationRules class; imputation.rules objects will need to be regenerated.

Usage

convert.snpMatrix(object)

convert.snpMatrix.dir(dir = ".", ext = "RData")

Arguments

`object`	Object to be converted
`dir`	A directory containing saved `snpMatrix` objects
`ext`	The file extension for files containing such objects

Value

convert.snpMatrix returns the converted object. convert.snpMatrix.dir rewrites the files in place.

Author(s)

David Clayton dc208@cam.ac.uk

snpStats

SnpMatrix and XSnpMatrix classes and methods

v1.40.0

GPL-3

Authors

David Clayton <dc208@cam.ac.uk>

Initial release

2019-10-08