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ld.example

Datasets to illustrate calculation of linkage disequilibrium statistics


Description

This R data file contains data from the International HapMap project, concerning 603 SNPs spanning a one megabase region on chromosome 22, in a sample of Europeans and a sample of Africans

Format

There are three objects in the file:

  • ceph.1m: A snpMatrix object containing the European genotype data

  • yri.1m: A snpMatrix object containing the African genotype data

  • support.ld: A dataframe containing details (chromosome position etc.

of the 603 SNPs

Source

References

The International HapMap Consortium. The International HapMap Project. Nature 426:789-796 (2003)


snpStats

SnpMatrix and XSnpMatrix classes and methods

v1.40.0
GPL-3
Authors
David Clayton <dc208@cam.ac.uk>
Initial release
2019-10-08

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