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sybil

deadEndMetabolites-methods

Identify Dead End Metabolites

Description

Search a metabolic network for metabolites, which are produced, but not consumed and vice versa.

Usage

## S4 method for signature 'modelorg'
deadEndMetabolites(object,retIds)

Arguments

object

An object of class modelorg.

retIds

Boolean. If set to TRUE, a list containing metabolite id's will be returned, otherwise a list of logical vectors.
Default: TRUE.

Value

A list will be returned:

dem

dead end metabolites
der

reactions containing dead end metabolites

Methods

signature(object = "modelorg")

method to use with class modelorg.

Author(s)

Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>

See Also

Class modelorg and readTSVmod.

sybil

Efficient Constrained Based Modelling

v2.1.5
GPL-3 | file LICENSE
Authors
Mayo Roettger [cre], Gabriel Gelius-Dietrich [aut], C. Jonathan Fritzemeier [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb]
Initial release
2019-03-07

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