sybil: mergeReact2Modelorg – R documentation

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mergeReact2Modelorg

Functions to subset and merge modelorg objects.

Description

The function getReaction can extract single react objects from a modelorg object. If those react objects are saved in a list, they can be passed to the function mergeReact2Modelorg to combine them to one new model.

Usage

mergeReact2Modelorg(reactList = NULL, id = "newModel", name = "")
## S4 method for signature 'modelorg,ANY'
getReaction(X, j = NULL, drop = T, tol = SYBIL_SETTINGS("TOLERANCE"))

Arguments

`reactList`	list of `react` objects
`id`	id for the new `modelorg`
`name`	name for the new `modelorg`
`j`	defines the reaction numbers or IDs to extract from the model.
`drop`	If FALSE, a list of length 1 is returned.
`tol`	Threshold for coefficients to be unequal zero.
`X`	`modelorg` object to extract reactions from.

Value

mergeReact2Modelorg returns a modelorg object.

getReaction returns a react object if length(j) = 1 and drop = TRUE. Otherwise a list of react objects.

Author(s)

Claus Jonathan Fritzemeier <clausjonathan.fritzemeier@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>

Examples

data(Ec_core)
	l <- getReaction(Ec_core, j=1:3)
	print(l)
	m <- mergeReact2Modelorg(l)
	print(m)

sybil

Efficient Constrained Based Modelling

v2.1.5

GPL-3 | file LICENSE

Authors

Mayo Roettger [cre], Gabriel Gelius-Dietrich [aut], C. Jonathan Fritzemeier [ctb], Rajen Piernikarczyk [ctb], Marc Andre Daxer [ctb], Benjamin Braasch [ctb], Abdelmoneim Desouki [ctb], Martin J. Lercher [ctb]

Initial release

2019-03-07