Remove Reactions From a Model
The function rmReact removes reactions from a model.
rmReact(model, react, rm_met = TRUE)
The argument react is evaluated by the function
checkReactId.
An object of class modelorg.
Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
Becker, S. A., Feist, A. M., Mo, M. L., Hannum, G., Palsson, B. Ø. and Herrgard, M. J. (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2, 727–738.
Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., Zielinski, D. C., Bordbar, A., Lewis, N. E., Rahmanian, S., Kang, J., Hyduke, D. R. and Palsson, B. Ø. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat Protoc 6, 1290–1307.
modelorg,
reactId and checkReactId
data(Ec_core)
Ec_r <- rmReact(Ec_core, c("ATPM", "Biomass"))Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.