sybil: singletonMetabolites-methods – R documentation

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singletonMetabolites-methods

Identify Singleton Metabolites

Search a metabolic network for metabolites, which appear only once in the stoichiometric matrix.

## S4 method for signature 'modelorg'
singletonMetabolites(object,tol,retIds)

`object`	An object of class `modelorg`.
`tol`	A numeric tolerance value: an entry of the stoichiometric matrix s_ij is considered to be non-zero if abs(s_ij) > tol is `TRUE`. Default: `SYBIL_SETTINGS("TOLERANCE")`.
`retIds`	Boolean. If set to `TRUE`, a list containing metabolite id's will be returned, otherwise a list of logical vectors. Default: `TRUE`.

A list will be returned:

`smet`	singleton metabolites
`sreact`	reactions containing singleton metabolites

Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>