Become an expert in R — Interactive courses, Cheat Sheets, certificates and more!

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Functions (19)

MRCA

MRCA

ancestor

ancestor

as.treedata

as.treedata

child

child

get.data-methods

get.data method

get.fields-methods

get.fields method

get_tree_data

get_tree_data

groupClade

groupClade

groupOTU

groupOTU

nodeid

nodeid

nodelab

nodelab

offspring

offspring

parent

parent

reexports

Objects exported from other packages

rootnode

rootnode

show-methods

show method

sibling

sibling

treedata

treedata

treedata-class

Class "treedata" This class stores phylogenetic tree with associated data

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

v0.3.3

Artistic-2.0

Authors

Guangchuang Yu [aut, cre, cph] (<https://orcid.org/0000-0002-6485-8781>), Bradley Jones [ctb], Zebulun Arendsee [ctb]

Initial release

tidytree

Functions (19)

tidytree

We don't support your browser anymore