Convert to data.frame
Convert varPartResults to data.frame
## S4 method for signature 'varPartResults' as.data.frame(x, row.names = NULL, optional = FALSE, ...)
x |
varPartResults |
row.names |
pass thru to generic |
optional |
pass thru to generic |
... |
other arguments. |
data.frame
# load library # library(variancePartition) # load simulated data: # geneExpr: matrix of gene expression values # info: information/metadata about each sample data(varPartData) # Specify variables to consider # Age is continuous so we model it as a fixed effect # Individual and Tissue are both categorical, so we model them as random effects form <- ~ Age + (1|Individual) + (1|Tissue) # Fit model varPart <- fitExtractVarPartModel( geneExpr[1:5,], form, info ) # convert to matrix as.data.frame(varPart)
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