Convert to matrix
Convert varPartResults to matrix
## S4 method for signature 'varPartResults' as.matrix(x, ...)
x |
varPartResults |
... |
other arguments. |
matrix
# load library # library(variancePartition) # load simulated data: # geneExpr: matrix of gene expression values # info: information/metadata about each sample data(varPartData) # Specify variables to consider # Age is continuous so we model it as a fixed effect # Individual and Tissue are both categorical, so we model them as random effects form <- ~ Age + (1|Individual) + (1|Tissue) # Fit model varPart <- fitExtractVarPartModel( geneExpr[1:5,], form, info ) # convert to matrix as.matrix(varPart)
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