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dot-getAllUniContrasts

Get all univariate contrasts


Description

Get all univariate contrasts

Usage

.getAllUniContrasts(exprObj, formula, data)

Arguments

exprObj

matrix of expression data (g genes x n samples), or ExpressionSet, or EList returned by voom() from the limma package

formula

specifies variables for the linear (mixed) model. Must only specify covariates, since the rows of exprObj are automatically used a a response. e.g.: ~ a + b + (1|c) Formulas with only fixed effects also work

data

data.frame with columns corresponding to formula

Value

Matrix testing each variable one at a time. Contrasts are on rows


variancePartition

Quantify and interpret divers of variation in multilevel gene expression experiments

v1.20.0
GPL (>= 2)
Authors
Gabriel E. Hoffman
Initial release
2020-10-26

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