Convert chrom objects to vcfR objects
Convert chrom objects to vcfR objects.
chromR2vcfR(x, use.mask = FALSE)
x |
Object of class chrom |
use.mask |
Logical, determine if mask from chrom object should be used to subset vcf data |
The chrom object is subset and recast as a vcfR object. When use.mask is set to TRUE (the default), the object is subset to only the variants (rows) indicated to include by the mask. When use.mask is set to FALSE, all variants (rows) from the chrom object are included in the new vcfR object.
Returns an object of class vcfR.
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