vcfR: summary_tables – R documentation

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summary_tables

Write summary tables from chromR objects

Write summary tables from chromR objects.

write.var.info(x, file = "", mask = FALSE, APPEND = FALSE)

write.win.info(x, file = "", APPEND = FALSE)

`x`	An object of class chromR
`file`	A filename for the output file
`mask`	logical vector indicating rows to use
`APPEND`	logical indicating whether to append to existing file (omitting the header) or write a new file

The function write.var.info takes the variant information table from a chromR object and writes it as a comma delimited file.

The function write.win.info takes the window information table from a chromR object and writes it as a comma delimited file.