Create window summaries of data
Create windows of non-overlapping data and summarize.
NM2winNM(x, pos, maxbp, winsize = 100L, depr = TRUE) z.score(x) windowize.NM(x, pos, starts, ends, summary = "mean", depr = TRUE)
x |
A NumericMatrix |
pos |
A vector of chromosomal positions for each row of data (variants) |
maxbp |
Length of chromosome |
winsize |
Size (in bp) for windows |
depr |
logical (T/F), this function has been deprecated, set to FALSE to override. |
starts |
integer vector of starting positions for windows |
ends |
integer vector of ending positions for windows |
summary |
string indicating type of summary (mean, median, sum) |
The numeric matrix where samples are in columns and variant data are in rows.
The windowing process therefore occurs along columns of data.
This matrix could be created with extract.gt.
The chromosome is expected to contain positions 1 though maxbp. If maxbp is not specified this can be inferred from the last element in pos.
Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.