Get ETOX ID
Query ETOX: Information System Ecotoxicology and Environmental Quality Targets https://webetox.uba.de/webETOX/index.do for their substance ID
get_etoxid(
query,
from = c("name", "cas", "ec", "gsbl", "rtecs"),
match = c("all", "best", "first", "ask", "na"),
verbose = TRUE
)query |
character; The searchterm |
from |
character; Type of input, can be one of "name" (chemical name), "cas" (CAS Number), "ec" (European Community number for regulatory purposes), "gsbl" (Identifier used by https://www.gsbl.de) and "rtecs" (Identifier used by the Registry of Toxic Effects of Chemical Substances database). |
match |
character; How should multiple hits be handeled? "all" returns
all matched IDs, "first" only the first match, "best" the best matching (by
name) ID, "ask" is a interactive mode and the user is asked for input, "na"
returns |
verbose |
logical; print message during processing to console? |
a tibble with 3 columns: the query, the match, and the etoxID
Before using this function, please read the disclaimer https://webetox.uba.de/webETOX/disclaimer.do.
Eduard Szöcs, Tamás Stirling, Eric R. Scott, Andreas Scharmüller, Ralf B. Schäfer (2020). webchem: An R Package to Retrieve Chemical Information from the Web. Journal of Statistical Software, 93(13). doi: 10.18637/jss.v093.i13.
etox_basic for basic information,
etox_targets for quality targets and
etox_tests for test results.
## Not run:
# might fail if API is not available
get_etoxid("Triclosan")
# multiple inputs
comps <- c("Triclosan", "Glyphosate")
get_etoxid(comps)
get_etoxid(comps, match = "all")
get_etoxid("34123-59-6", from = "cas") # Isoproturon
get_etoxid("133483", from = "gsbl") # 3-Butin-1-ol
get_etoxid("203-157-5", from = "ec") # Paracetamol
## End(Not run)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.