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wrGraph

Graphics in the Context of Analyzing High-Throughput Data

Additional options for making graphics in the context of analyzing high-throughput data are available here. This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots, automatic checking for optimal location of legends in plots, small histograms to insert as legends, histograms re-transforming axis labels to linear when plotting log2-transformed data, a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats, principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples, generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>, staggered count plots and generation of mouse-over interactive html pages.

Functions (18)

MAplotW

MA-plot (differential intensity versus average intensity)

VolcanoPlotW

Volcano-plot (Statistical Test Outcome versus Relative Change)

addBagPlot

Add bagplot to existing plot

checkForLegLoc

Find best place on plot for placing legend

convertPlotCoordPix

Convert points of plot to coordinates in pixels

cumFrqPlot

Cumulative (or sorted) frequency plot (takes columns of 'dat' as separate series)

histW

Histogram (version by WR)

imageW

Display numeric content of matrix as image

legendHist

Add histogram to existing plot

mouseOverHtmlFile

Create mouse-over interactive html-pages (with links)

partitionPlot

Make matrix for layout to partition plotting area

plotBy2Groups

Separate and plot data by 2 groups

plotLinReg

Plot linear regression and confidence interval of regression

plotPCAw

PCA plot with bag-plot to highlight groups

plotW2Leg

x-y plot with 2 legends

profileAsClu

Plot profile(s) according to CLustering

staggerdCountsPlot

Staggered Chart for Ploting Counts to Multiple Leveles of the Threshold used

vioplotW

Violin-plots version W

wrGraph

Graphics in the Context of Analyzing High-Throughput Data

v1.2.3
GPL-3
Authors
Wolfgang Raffelsberger [aut, cre]
Initial release

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