wrMisc: simpleFragFig – R documentation

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simpleFragFig

Simple figure showing line from start- to end-sites of edges (or fragments) defined by their start- and end-sites simpleFragFig draws figure showing start- and end-sites of edges (or fragments)

Description

Simple figure showing line from start- to end-sites of edges (or fragments) defined by their start- and end-sites

simpleFragFig draws figure showing start- and end-sites of edges (or fragments)

Usage

simpleFragFig(
  frag,
  fullSize = NULL,
  sortByHead = TRUE,
  useTit = NULL,
  useCol = NULL,
  displNa = TRUE,
  useCex = 0.7
)

Arguments

`frag`	(matrix) 2 columns defining begin- and end-sites (as interger values)
`fullSize`	(integer) optional max size used for figure (x-axis)
`sortByHead`	(logical) sort by begin-sites (if `TRUE`) or sort by end-sites
`useTit`	(character) custom title
`useCol`	(character) specify colors, if numeric vector will be onsidered as score values
`displNa`	(character) display names of edges (figure may get crowded)
`useCex`	(numeric) expansion factor, see also `par`

Value

matrix with mean values

Examples

frag2 <- cbind(beg=c(2,3,7,13,13,15,7,9,7, 3,7,5,7,3),end=c(6,12,8,18,20,20,19,12,12, 4,12,7,12,4)) 
rownames(frag2) <- c("A","E","B","C","D","F","H","G","I", "J","K","L","M","N")
simpleFragFig(frag2,fullSize=21,sortByHead=TRUE) 
buildTree(frag2)

wrMisc

Analyze Experimental High-Throughput (Omics) Data

v1.5.4

GPL-3

Authors

Wolfgang Raffelsberger [aut, cre]

Initial release