wrProteo: removeSampleInList – R documentation

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removeSampleInList

Remove samples/columns from list of matrixes Remove samples (ie columns) from every instance of list of matrixes. Note: This function assumes same order of columns in list-elements 'listElem' !

Description

Remove samples/columns from list of matrixes

Remove samples (ie columns) from every instance of list of matrixes. Note: This function assumes same order of columns in list-elements 'listElem' !

Usage

removeSampleInList(
  dat,
  remSamp,
  listElem = c("abund", "quant"),
  silent = FALSE,
  callFrom = NULL
)

Arguments

`dat`	(list) main input to be filtered
`remSamp`	(integer) column number to exclude
`listElem`	(character) names of list-elements where columns indicated with 'remSamp' should be removed
`silent`	(logical) suppress messages
`callFrom`	(character) allows easier tracking of messages produced

Value

matrix including imputed values or list of final and matrix with number of imputed by group (plus optional plot)

Examples

set.seed(2019)
datT6 <- matrix(round(rnorm(300)+3,1),ncol=6,dimnames=list(paste("li",1:50,sep=""),
  letters[19:24]))
datL <- list(abund=datT6,quant=datT6,annot=matrix(nrow=nrow(datT6),ncol=2)) 
datDelta2 <- removeSampleInList(datL,remSam=2)

wrProteo

Proteomics Data Analysis Functions

v1.4.1

GPL-3

Authors

Wolfgang Raffelsberger [aut, cre]

Initial release