Population
Extends RawPop-class to add sex, genetic values,
phenotypes, and pedigrees.
## S4 method for signature 'Pop' x[i] ## S4 method for signature 'Pop' c(x, ...) ## S4 method for signature 'Pop' show(object)
x |
a 'Pop' object |
i |
index of individuals |
... |
additional 'Pop' objects |
object |
a 'Pop' object |
[: Extract Pop by index or id
c: Combine multiple Pops
show: Show population summary
idan individual's identifier
motherthe identifier of the individual's mother
fatherthe identifier of the individual's father
sexsex of individuals: "M" for males, "F" for females, and "H" for hermaphrodites
nTraitsnumber of traits
gvmatrix of genetic values. When using GxE traits, gv reflects gv when w=0. Dimensions are nInd by nTraits.
phenomatrix of phenotypic values. Dimensions are nInd by nTraits.
ebvmatrix of estimated breeding values. Dimensions are nInd rows and a variable number of columns.
gxelist containing GxE slopes for GxE traits
fixEffa fixed effect relating to the phenotype. Used by genomic selection models but otherwise ignored.
repsthe number of replications used to measure the phenotype. Used by genomic selection models, but otherwise ignored.
misca list whose elements correspond to individuals in the population. This list is normally empty and exists solely as an open slot available for uses to store extra information about individuals.
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