AlphaSimR: calcGCA – R documentation

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calcGCA

Calculate GCA

Description

Calculate general combining ability of test crosses. Intended for output from hybridCross using the "testcross" option, but will work for any population.

Usage

calcGCA(pop, use = "pheno")

Arguments

`pop`	an object of `Pop-class` or `HybridPop-class`
`use`	tabulate either genetic values "gv", estimated breeding values "ebv", or phenotypes "pheno"

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=10, nChr=1, segSites=10, inbred=TRUE)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)

#Create population
pop = newPop(founderPop, simParam=SP)

#Make crosses for full diallele
pop2 = hybridCross(pop, pop, simParam=SP)
GCA = calcGCA(pop2, use="gv")

AlphaSimR

Breeding Program Simulations

v0.13.0

MIT + file LICENSE

Authors

Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [aut] (<https://orcid.org/0000-0001-8008-2787>), John Hickey [aut] (<https://orcid.org/0000-0001-5675-3974>), Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), David Wilson [ctb]

Initial release

2020-10-20