AlphaSimR: editGenomeTopQtl – R documentation

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editGenomeTopQtl

Edit genome - the top QTL

Description

Edits the top QTL (with the largest additive effect) to a homozygous state for the allele increasing. Only nonfixed QTL are edited The gv slot is recalculated to reflect the any changes due to editing, but other slots remain the same.

Usage

editGenomeTopQtl(pop, ind, nQtl, trait = 1, increase = TRUE, simParam = NULL)

Arguments

`pop`	an object of `Pop-class`
`ind`	a vector of individuals to edit
`nQtl`	number of QTL to edit
`trait`	which trait effects should guide selection of the top QTL
`increase`	should the trait value be increased or decreased
`simParam`	an object of `SimParam`

Value

Returns an object of Pop-class

Examples

#Create founder haplotypes
founderPop = quickHaplo(nInd=2, nChr=1, segSites=10)

#Set simulation parameters
SP = SimParam$new(founderPop)
SP$addTraitA(10)

#Create population
pop = newPop(founderPop, simParam=SP)

#Change up to 10 loci for individual 1 
pop2 = editGenomeTopQtl(pop, ind=1, nQtl=10, simParam=SP)

AlphaSimR

Breeding Program Simulations

v0.13.0

MIT + file LICENSE

Authors

Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [aut] (<https://orcid.org/0000-0001-8008-2787>), John Hickey [aut] (<https://orcid.org/0000-0001-5675-3974>), Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), David Wilson [ctb]

Initial release

2020-10-20