AlphaSimR: quickHaplo – R documentation

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quickHaplo

Quick founder haplotype simulation

Description

Rapidly simulates founder haplotypes by randomly sampling 0s and 1s. This is equivalent to having all loci with allele frequency 0.5 and being in linkage equilibrium.

Usage

quickHaplo(nInd, nChr, segSites, genLen = 1, ploidy = 2L, inbred = FALSE)

Arguments

`nInd`	number of individuals to simulate
`nChr`	number of chromosomes to simulate
`segSites`	number of segregating sites per chromosome
`genLen`	genetic length of chromosomes
`ploidy`	ploidy level of organism
`inbred`	should founder individuals be inbred

Value

an object of MapPop-class

Examples

# Creates a populations of 10 outbred individuals
# Their genome consists of 1 chromosome and 100 segregating sites
founderPop = quickHaplo(nInd=10,nChr=1,segSites=100)

AlphaSimR

Breeding Program Simulations

v0.13.0

MIT + file LICENSE

Authors

Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>), Gregor Gorjanc [aut] (<https://orcid.org/0000-0001-8008-2787>), John Hickey [aut] (<https://orcid.org/0000-0001-5675-3974>), Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>), David Wilson [ctb]

Initial release

2020-10-20