Set EBV
Adds genomic estimated values to a populations's EBV slot using output from a genomic selection functions. The genomic estimated values can be either estimated breeding values, estimated genetic values, or estimated general combining values.
setEBV( pop, solution, value = "gv", targetPop = NULL, append = FALSE, simParam = NULL )
pop |
an object of |
solution |
an object of |
value |
the genomic value to be estimated. Can be either "gv", "bv", "female", or "male". |
targetPop |
an optional target population that can be used when value is "bv", "female", or "male". When supplied, the allele frequency in the targetPop is used to set these values. |
append |
should estimated values be appended to existing data in the EBV slot. If TRUE, a new column is added. If FALSE, existing data is replaced with the new estimates. |
simParam |
an object of |
Returns an object of Pop-class
#Create founder haplotypes founderPop = quickHaplo(nInd=10, nChr=1, segSites=20) #Set simulation parameters SP = SimParam$new(founderPop) SP$addTraitA(10) SP$setVarE(h2=0.5) SP$addSnpChip(10) #Create population pop = newPop(founderPop, simParam=SP) #Run GS model and set EBV ans = RRBLUP(pop, simParam=SP) pop = setEBV(pop, ans, simParam=SP) #Evaluate accuracy cor(gv(pop), ebv(pop))
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