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anno_joyplot

Joyplot Annotation


Description

Joyplot Annotation

Usage

anno_joyplot(x, which = c("column", "row"), gp = gpar(fill = "#000000"),
    scale = 2, transparency = 0.6,
    axis = TRUE, axis_param = default_axis_param(which),
    width = NULL, height = NULL)

Arguments

x

A matrix or a list. If x is a matrix or a data frame, columns correspond to observations.

which

Whether it is a column annotation or a row annotation?

gp

Graphic parameters for the boxes. The length of the graphic parameters should be one or the number of observations.

scale

Relative height of the curve. A value higher than 1 increases the height of the curve.

transparency

Transparency of the filled colors. Value should be between 0 and 1.

axis

Whether to add axis?

axis_param

parameters for controlling axis. See default_axis_param for all possible settings and default parameters.

width

Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation.

height

Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation.

Value

An annotation function which can be used in HeatmapAnnotation.

See Also

Examples

m = matrix(rnorm(1000), nc = 10)
lt = apply(m, 2, function(x) data.frame(density(x)[c("x", "y")]))
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row")
draw(anno, test = "joyplot")
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", gp = gpar(fill = 1:10))
draw(anno, test = "joyplot + col")
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", scale = 1)
draw(anno, test = "joyplot + scale")

m = matrix(rnorm(5000), nc = 50)
lt = apply(m, 2, function(x) data.frame(density(x)[c("x", "y")]))
anno = anno_joyplot(lt, width = unit(4, "cm"), which = "row", gp = gpar(fill = NA), scale = 4)
draw(anno, test = "joyplot")

ComplexHeatmap

Make Complex Heatmaps

v2.6.2
MIT + file LICENSE
Authors
Zuguang Gu
Initial release
2020-11-12

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