ComplexHeatmap

Constructor Method for AdditiveUnit Class

Class for Concatenating Heatmaps and Annotations

Constructor of AnnotationFunction Class

The AnnotationFunction Class

Constructor Method for ColorMapping Class

Class for Color Mapping

Make complex heatmaps

Subset an AnnotationFunction Object

Subset a Heatmap

Subset the HeatmapAnnotation object

Subset a HeatmapList object

Subset an SingleAnnotation Object

Subset the Combination Matrix

Subset method of gridtext class

Constructor method for Heatmap class

Class for a Single Heatmap

Constructor Method for HeatmapAnnotation class

Class for Heatmap Annotations

Constructor method for HeatmapList class

Class for a list of heatmaps

Make a Single Legend

Constructor method for Legends class

The Class for Legends

Constructor Method for SingleAnnotation Class

Class for a Single Annotation

Make the UpSet plot

Horizontally Add Heatmaps or Annotations to a Heatmap List

Add Heatmap to the Heatmap List

Add Annotations or Heatmaps as a Heatmap List

Add heatmaps and row annotations to the heatmap list

Method dispatch page for add_heatmap

Adjust the Positions of nodes/leaves in the Dendrogram

Adjust Heatmap List

Automatically generate alter_fun

Barplot Annotation

Block annotation

Boxplot Annotation

Density Annotation

Empty Annotation

Histogram Annotation

Horizon chart Annotation

Image Annotation

Joyplot Annotation

Lines Annotation

Link Annotation

Link annotation with labels

Barplot Annotation for oncoPrint

Points Annotation

Simple Annotation

Summary Annotation

Text Annotation

Zoom annotation

Grob for Annotation Axis

Size of the Annotation Legends

Attach heatmap annotations to the heatmap

Concatenate A List of ColorMapping objects

Concatenate Heatmap Annotations

Cluster within and between Groups

Draw Legend Based on Color Mapping

Construct Column Annotations

Get Column Dendrograms from a Heatmap

Get Column Dendrograms from a hHeatmap List

Method dispatch page for column_dend

Get Column Order from a Aeatmap List

Get Column Order from a Heatmap List

Method dispatch page for column_order

Degrees of the Combination sets

Names of the Combination sets

Sizes of the Combination sets

Compare heatmaps between pheatmap::pheatmap() and ComplexHeatmap::pheatmap()

Complement Set Size

Heights of Heatmap Components

Height of Heatmap List Components

Method dispatch page for component_height

Widths of Heatmap Components

Width of Heatmap List Components

Method dispatch page for component_width

Copy the AnnotationFunction Object

Copy the SingleAnnotation object

Method dispatch page for copy_all

Decorate Heatmap Annotation

Decorate Heatmap Column Dendrograms

Decorate Heatmap Column Names

Decorate Heatmap Column Titles

Decorate Heatmap Dendrograms

Decorate Heatmap Dimension Names

Decorate Heatmap Bodies

Decorate Heatmap Row Dendrograms

Decorate Heatmap Row Names

Decorate Heatmap Row Titles

Decorate Heatmap Titles

The Default Parameters for Annotation Axis

Default get_type for oncoPrint()

Height of the Dendrograms

Coordinates of the Dendrogram

Grob for Dendrogram

Visualize Density Distribution by Heatmap

Dimension of the Heatmap

Calculate Pairwise Distance from a Matrix

Draw the AnnotationFunction Object

Draw a Single Heatmap

Draw the Heatmap Annotations

Draw a list of heatmaps

Draw the Legends

Draw the Single Annotation

Method dispatch page for draw

Draw Heatmap Annotations on the Heatmap

Draw legends for All Annotations

Draw Heatmap Dendrograms

Draw row names or column names

Draw Heatmap Body

Draw legends for All Heatmaps

Draw the List of Heatmaps

Draw Heatmap Title

Draw Heatmap List Title

Method dispatch page for draw_title

Extract Elements in a Combination set

Full set of code of combination sets

Convert XY in a Parent Viewport

Get a List of ColorMapping objects

Get a List of Annotation Legend Parameters

Draw Annotation Axis

Draw a Single Boxplot

Draw the Dendrogram

Draw the Legends

Mark the text for the rendering by gridtext package

Size of the Heatmap Legends

Height of the AnnotationFunction Object

Height of the Heatmap

Height of the HeatmapAnnotation Object

Height of the Heatmap List

Height of the Legends

Height of the SingleAnnotation object

Assign the Height to the AnnotationFunction Object

Assign the Height to the HeatmapAnnotation Object

Assign the Height to the SingleAnnotation Object

Height for annotation_axis Grob

Grob height for packed_legends

Grob height for legend_body

Grob height for packed_legends

Global Options for Heatmaps

Global Options for Heatmaps

Get the heatmap positions on the graphic device

Interactive heatmaps with a shiny app

Calculate the width and height of the heatmaps

Test Whether it is an Absolute Unit

Number of Annotations

Length of the HeatmapList object

List All Heatmap Components

Convert a List of Sets to a Binary Matrix

Make Cluster on Columns

Make a Combination Matrix for UpSet Plot

Make the Layout of a Single Heatmap

Make Layout for the Heatmap List

Method dispatch page for make_layout

Make Cluster on Rows

Map Values to Colors

Maximum Height of Text

Maximum Width of Text

Merge Dendrograms

Annotation Names

Names of the heatmaps/annotations

Assign Annotation Names

Number of Columns in the Heatmap

Number of Observations

Number of Observations

Number of Observations

Normalize a list of combination matrice

Number of Rows in the Heatmap

Make oncoPrint

Order of the Combination Sets

Pack Legends

Vertically Add Heatmaps or Annotations to a Heatmap List

Translate pheatmap::pheatmap to ComplexHeatmap::Heatmap

Get Values in a Matrix by Pair-wise Indices

Prepare the Heatmap

Print the comb_mat Object

Resize the Width or Height of Heatmap Annotations

Restore the index vector to index matrix in layer_fun

Construct Row Annotations

Barplots as Row Annotation

Boxplots as Row Annotation

Density as Row Annotation

Histograms as Row Annotation

Points as Row Annotation

Text as Row Annotation

Get Row Dendrograms from a Heatmap

Get Row Dendrograms from a Heatmap List

Method dispatch page for row_dend

Get Row Order from a Heatmap

Get Row Order from a Heatmap List

Method dispatch page for row_order

Select an area in the heatmap

Select a position in the heatmap

Set Height of Heatmap Component

Set Width of Heatmap Component

Set Names

Modify Set Names

Set Sizes

Print the AnnotationFunction Object

Print the ColorMapping Object

Draw the Single Heatmap with Defaults

Print the HeatmapAnnotation object

Draw a list of heatmaps with default parameters

Print the SingleAnnotation object

Method dispatch page for show

Size of the AnnotationFunction Object

Size of the HeatmapAnnotation Object

Size of the SingleAnnotation Object

Assign the Size to the AnnotationFunction Object

Assign the Size to the HeatmapAnnotation Object

Assign the Size to the SingleAnnotation Object

Adjust positions of rectanglar shapes

str method

Subset a gpar Object

Subset the Matrix by Rows

Subset the vector

Print the Summary of a Heatmap

Summary of a Heatmap List

Transpost the Combination Matrix

Test alter_fun for oncoPrint()

Unify a List of Matrix

Default UpSet Right Annotation

Default UpSet Top Annotation

Width of the AnnotationFunction Object

Width of the Heatmap

Width of the HeatmapAnnotation Object

Width of the Heatmap List

Width of the Legends

Width of the SingleAnnotation Object

Assign the Width to the AnnotationFunction Object

Assign the Width to the HeatmapAnnotation Object

Assign the Width to the SingleAnnotation Object

Width for annotation_axis Grob

Grob width for packed_legends

Grob width for legend_body

Grob width for packed_legends