Graph genomic clines fit to data
A quick way to summarize and view the results of Cline.fit
Cline.plot(cfit)
cfit |
An object: the output of |
Creates up to sixteen graphs, depending on which models are fit to the data. For each fitted model, fitted clines are graphed first. For two-parameter models, a bivariate graph of parameter estimates is plotted next (this is left blank for four-parameter models). Finally, a Q-Q plot of squared Mahalanobis distances vs. CHi-squared quantiles is graphed. Putative outlier markers are indicated in red.
Benjamin M. Fitzpatrick
Fitzpatrick, B. M. 2012. Alternative forms for genomic clines. In prep
See gcline.fn for the basic fitting function. Cline.plot provides an easy way to visualize the output of Cline.fit.
data(Bluestone)
BS.fit <- Cline.fit(Bluestone[,1:12],model=c("logit.logistic","Barton"))
Cline.plot(BS.fit)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.