Heatplus: oldCutplot.dendrogram – R documentation

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oldCutplot.dendrogram

Plot Subtrees of a Dendrogram in Different Colors

Plot a dendrogram, cut the tree at a given height, and draw the resulting subtrees in different colors (OLD version, to be deprecated)

oldCutplot.dendrogram(x, h, cluscol, leaflab = "none", horiz = FALSE, lwd = 3, ...)

`x`	a dendrogram.
`h`	the height at which the dendrogram is cut.
`cluscol`	the colors used for the subtrees; defaults to `rainbow`.
`leaflab`	indicates how leaf labels are to be drawn< defaults to 'perpendicular'.
`horiz`	logical indicating whether to plot the dendrogram horizontally or vertically.
`lwd`	the line width used for the color subtrees.
`...`	arguments to `plot.dendrogram`.

This routine makes use of the functions plot.dendrogram and plotNode in package stats.

Alexander Ploner <Alexander.Ploner@ki.se>

data(swiss)
cc = as.dendrogram(hclust(dist(swiss)))
oldCutplot.dendrogram(cc, h=80)

Heatmaps with row and/or column covariates and colored clusters

v2.36.0

GPL (>= 2)

Authors

Alexander Ploner <Alexander.Ploner@ki.se>

Initial release

2015-09-03