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Heatplus

Heatmaps with row and/or column covariates and colored clusters

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Functions (20)

BrewerClusterCol

Color scheme for clusters

Alternative color schemes

Undocumented

Undocumented functions

Annotated heatmaps

annHeatmap2

Annotated heatmaps

breakColors

Color palette for (symmetric) breaks

convAnnData

Converting data frames for display as annotation

A simple legend

Palette from green to red via black

heatmapLayout

Generate a layout for an (annotated) heatmap

Display Data as Heatmap

heatmap_plus

Display an Annotated Heatmap

modifyExistingList

Override existing list entries

Get nice (symmetric) breaks for an interval

oldCutplot.dendrogram

Plot Subtrees of a Dendrogram in Different Colors

oldPicketplot

Barplots for Several Binary Variables

Display a data frame of annotation information

plot.annHeatmap

Plotting method for annotated heatmaps

print.annHeatmap

Printing information about annotated heatmaps

Regular heatmaps with a legend

Heatplus

Heatmaps with row and/or column covariates and colored clusters

v2.36.0

GPL (>= 2)

Authors

Alexander Ploner <Alexander.Ploner@ki.se>

Initial release

2015-09-03

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