Regular heatmaps with a legend
Creating regular heatmaps, without annotation, but allowing for a legend
regHeatmap(x, ...)
## Default S3 method:
regHeatmap(x, dendrogram = list(clustfun = hclust, distfun = dist, status = "yes"), labels = NULL, legend = TRUE, ...)x |
a numerical matrix |
dendrogram |
a list controlling the options for row- and column dendrogram, see |
labels |
a list controlling the row- and column labels as well as their location and size, see |
legend |
either a logical value, indicating whether to draw a legend at the default location determined by the function, or one of the sides of the plot (1-4), see |
... |
extra options passed to |
A gelded wrapper for annHeatmap2 that allows for heatmaps without annotation or clustering on the dendrograms, but still offer some control over dendrograms, labels and legend.
These functions generate an object representing the heatmap; in order to produce graphical output, you have to invoke the plot method, see Examples.
An object of class annHeatmap
## Default
set.seed(219)
mat = matrix(rnorm(100), ncol=5)
map1 = regHeatmap(mat)
plot(map1)Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.