Get and set isotope error in msgfPar objects
These functions allow you to retrieve and set the isotope error used when calculating the parent ion error range
isotopeError(object) isotopeError(object) <- value ## S4 method for signature 'msgfPar' isotopeError(object) ## S4 replacement method for signature 'msgfPar,numeric' isotopeError(object) <- value ## S4 replacement method for signature 'msgfPar,msgfParIsotopeError' isotopeError(object) <- value
object |
An msgfPar object |
value |
Either an integer vector or an msgfParIsotopeError object |
In case of the getter an integer vector
msgfPar: Get the isotope error currently used
object = msgfPar,value = numeric: Set the isotope error with an integer vector
object = msgfPar,value = msgfParIsotopeError: Set the isotope error with an msgfParIsotopeError
object
Other msgfPar-getter_setter: chargeRange,
db, enzyme,
fragmentation, instrument,
lengthRange, matches,
mods, ntt,
protocol, tda,
tolerance
parameters <- msgfPar(system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta')) isotopeError(parameters) <- c(0, 3) isotopeError(parameters)
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