A class handling enzyme selection
This class defines a digestion enzyme selection and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParEnzyme' show(object) ## S4 method for signature 'msgfParEnzyme' length(x) ## S4 method for signature 'msgfParEnzyme' getMSGFpar(object) msgfParEnzyme(enzyme)
object |
An msgfParEnzyme object |
x |
An msgfParEnzyme object |
enzyme |
Either an integer or a string |
For length() An integer.
For getMSGFpar() A string.
For msgfParEnzyme() An msgfParEnzyme object.
show: Short summary of msgfParEnzyme object
length: Report the length of an msgfParEnzyme object
getMSGFpar: Get system compliant function
call
enzymeAn integer specifiying the selection of enzyme. See the detail
section of msgfPar
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParIsotopeError-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParNtt-class,
msgfParProtocol-class,
msgfParTda-class,
msgfParTolerance-class,
msgfPar
enzyme <- msgfParEnzyme(1)
enzyme <- msgfParEnzyme('Trypsin')Please choose more modern alternatives, such as Google Chrome or Mozilla Firefox.