A class handling use of target-decoy approach for FDR estimation
This class defines whether to use target-decoy approach and provides methods to get correct system call parameters.
## S4 method for signature 'msgfParTda' show(object) ## S4 method for signature 'msgfParTda' length(x) ## S4 method for signature 'msgfParTda' getMSGFpar(object) msgfParTda(value)
object |
An msgfParTda object |
x |
An msgfParTda object |
value |
A boolean defining whether to use tda or not |
For length() An integer.
For getMSGFpar() A string.
For msgfParTda() An msgfParTda object.
show: Short summary of msgfParTda object
length: Report the length of an msgfParTda object
getMSGFpar: Get system compliant function call
tdaA boolean defining whether to use tda or not
Other msgfParClasses: msgfPar-class,
msgfParChargeRange-class,
msgfParEnzyme-class,
msgfParFragmentation-class,
msgfParInstrument-class,
msgfParIsotopeError-class,
msgfParLengthRange-class,
msgfParMatches-class,
msgfParModification-class,
msgfParModificationList-class,
msgfParNtt-class,
msgfParProtocol-class,
msgfParTolerance-class,
msgfPar
tda <- msgfParTda(TRUE)
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