RCy3

Add to Group

RCy3: Functions to Access and Control Cytoscape

Remove from Group

Add CyEdges

Add CyNodes

Analyze Network

Apply Filter

Bundle Edges

Clear Edge Bends

Clear Edge Property Bypass

Clear Network Center Bypass

Clear Network Property Bypass

Clear Network Zoom Bypass

Clear Node Opacity Bypass

Clear Node Property Bypass

Clear Selection

Clone a Cytoscape Network

Close Session

Collapse Group

Command Echo

Command Open Dialog

Command Pause

Command Quit

Command Run File

Command Sleep

Open Swagger docs for CyREST Commands API

Commands GET

Commands Help

Commands POST

Run a Command

Copy Visual Style

Create Column Filter

Create Composite Filter

Create Degree Filter

createGraphFromNetwork

Create Group

Create Group by Column

Create an igraph network from a Cytoscape network

Create a network from data frames

Create Network From Graph

Create a Cytoscape network from an igraph network

Create subnetwork from existing network

Create a visual style from components

Cybrowser Close

Cybrowser Dialog

Cybrowser Hide

Cybrowser List

Cybrowser Send

Cybrowser Show

Cybrowser Version

Open Swagger docs for CyREST API

CyREST DELETE

CyREST GET

CyREST POST

CyREST PUT

Available CyREST API Versions

Free Up Unused Memory for Cytoscape

Memory Available to Cytoscape

Number of Processors Available to Cytoscape

Ping Cytoscape

Cytoscape and CyREST API Versions

Delete All Networks

Delete Duplicate Edges

Delete (or Ungroup) a Group

Delete Network

Delete Selected Edges

Delete Selected Nodes

Delete Self Loops

Delete Style Mapping

Delete a table column

Delete Visual Style

Diffusion Advanced

Diffusion Basic

Disable App

Dock Panel

Enable App

Expand Group

Export Filters

Export Image

Export Network

Export Network To NDEx

Export Visual Styles

Fit Content

Float Panel

Get All Edges

Get All Nodes

Get App Information

App Status

List Apps With Updates

Get Arrow Shapes

List Available Apps

Get Background Color Default

Get Collection List

Get Collection Name

Get Collection Networks

Get Collection Suid

Get Current Style

List Disabled Apps

Get Edge Color

Get Edge Count

Get Edge Information

Get Edge Line Style

Get Edge Line Width

Get Edge Property Values

Get Edge Selection Color Default

Get Edge Target Arrow Shape

Get Filter List

Get list of nodes neighboring provided list

Get Group Information

List Installed Apps

Get Layout Name Mapping

Get Layout Names

Get Layout Property Names

Get Layout Property Type

Get Layout Property Value

Get Line Styles

Get Network Center

Get the number of Cytoscape networks

Get the list of Cytoscape networks

Get Network NDEx Id

Get the name of a network

Get Network Property Values

Get the SUID of a network

Get the SUID of a network view

Get Network Views

Get Network Zoom

Get Node Color

Get Node Count

Get Node Height

Get Node Position

Get Node Property Values

Get Node Selection Color Default

Get Node Shapes

Get Node Size

Get Node Width

Get Selected Edge Count

Get Selected Edges

Get Selected Node Count

Get Selected Nodes

Get the values of dependencies in a style

Get Table Column Names

Get Table Column Types

Get table column values

Get table cell value

List Uninstalled Apps

Get Visual Property Default

Get Visual Property Names

Get Visual Style Names

Hide All Panels

Hide Edges

Hide Nodes

Hide Panel

Hide Selected Edges

Hide Selected Nodes

Import Filters

Import Network From File

Import Network From NDEx

Import Visual Styles

Install App

Invert Edge Selection

Invert Node Selection

Copy a layout from one network to another

Apply a layout to a network

List Groups

Loads data into Cytoscape tables keyed by row

Lock Node Dimensions

Make Simple Graph

Make Simple Igraph

Map Table Column

Creates a mapping between an attribute and a visual property

Match Arrow Color To Edge

Merge Networks

Open App Store Page

Open Session File or URL

Remove Node Custom Graphics

Rename a network

Rename Table Column

Save Session to File

Select all edges

Select all nodes

Select Edges

Select Edges Adjacent To Selected Nodes

Select the edges connecting selected nodes in Cytoscape Network

Select first neighbor nodes

Select Nodes

Select Nodes Connected By Selected Edges

Set Background Color Default

Set current network

Set Current View

Set Edge Color Bypass

Set Edge Color Default

Set Edge Color Mapping

Set Edge Font Face Bypass

Set Edge Font Face Default

Set Edge Font Face Mapping

Set Edge Font Size Bypass

Set Edge Font Size Default

Set Edge Font Size Mapping

Set Edge Label Bypass

Set Edge Label Color Bypass

Set Edge Label Color Default

Set Edge Label Color Mapping

Set Edge Label Default

Set Edge Label Mapping

Set Edge Label Opacity Bypass

Set Edge Label Opacity Default

Set Edge Label Opacity Mapping

Set Edge Line Style Bypass

Set Edge Line Style Default

Set Edge Line Style Mapping

Set Edge Line Width Bypass

Set Edge Line Width Default

Set Edge Line Width Mapping

Set Edge Opacity Bypass

Set Edge Opacity Default

Set Edge Opacity Mapping

Set Edge Property Bypass

Set Edge Selection Color Default

Set Edge Source Arrow Color Bypass

Set Edge Source Arrow Color Default

Set Edge Source Arrow Color Mapping

Set Edge Source Arrow Mapping

Set Edge Source Arrow Shape Bypass

Set Edge Source Arrow Shape Default

Set Edge Source Arrow Shape Mapping

Set Edge Target Arrow Color Bypass

Set Edge Target Arrow Color Default

Set Edge Target Arrow Color Mapping

Set Edge Target Arrow Mapping

Set Edge Target Arrow Shape Bypass

Set Edge Target Arrow Shape Default

Set Edge Target Arrow Shape Mapping

Set Edge Tooltip Bypass

Set Edge Tooltip Default

Set Edge Tooltip Mapping

Set Layout Properties

Set Network Center Bypass

Set Network Property Bypass

Set Network Zoom Bypass

Set Node Border Color Bypass

Set Node Border Color Default

Set Node Border Color Mapping

Set Node Border Opacity Bypass

Set Node Border Opacity Default

Set Node Border Opacity Mapping

Set Node Border Width Bypass

Set Node Border Width Default

Set Node Border Width Mapping

Set Node Color Bypass

Set Node Color Default

Set Node Color Mapping

Set Node Combo Opacity Mapping

Set Node Custom Bar Chart

Set Node Custom Box Chart

Set Node Custom HeatMap Chart

Set Node Custom Line Chart

Set Node Custom Linear Gradient

Set Node Custom Pie Chart

Set Node Custom Position

Set Node Custom Radial Gradient

Set Node Custom Ring Chart

Set Node Fill Opacity Bypass

Set Node Fill Opacity Default

Set Node Fill Opacity Mapping

Set Node Font Face Bypass

Set Node Font Face Default

Set Node Font Face Mapping

Set Node Font Size Bypass

Set Node Font Size Default

Set Node Font Size Mapping

Set Node Height Bypass

Set Node Height Default

Set Node Height Mapping

Set Node Label Bypass

Set Node Label Color Bypass

Set Node Label Color Default

Set Node Label Color Mapping

Set Node Label Default

Set Node Label Mapping

Set Node Label Opacity Bypass

Set Node Label Opacity Default

Set Node Label Opacity Mapping

Set Node Opacity Bypass

Set Node Property Bypass

Set Node Selection Color Default

Set Node Shape Bypass

Set Node Shape Default

Set Node Shape Mapping

Set Node Size Bypass

Set Node Size Default

Set Node Size Mapping

Set Node Tooltip Bypass

Set Node Tooltip Default

Set Node Tooltip Mapping

Set Node Width Bypass

Set Node Width Default

Set Node Width Mapping

Set Style Dependencies

Set Visual Property Default

Set Visual Style

Sync Node Custom Graphics Size

Toggle Graphics Details

Unhide All

Unhide Edges

Unhide Nodes

Uninstall App

Update App

Update Network In NDEx

Updates the default values of visual properties in a style

Updates a visual property mapping in a style