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getTableColumns

Get table column values


Description

Retrieve one or more columns of data from node, edge or network tables.

Usage

getTableColumns(
  table = "node",
  columns = NULL,
  namespace = "default",
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table

name of table, e.g., node (default), edge, network

columns

names of columns to retrieve values from as list object or comma-separated list; default is all columns

namespace

namespace of table; default is "default"

network

(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.

base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Details

The 'SUID' column is always retrieved along with specified columns. The 'SUID' values are used as row.names in the returned data.frame.

Value

A data.frame of column values

Examples

getTableColumns()
getTableColumns('node','group')

RCy3

Functions to Access and Control Cytoscape

v2.10.2
MIT + file LICENSE
Authors
Alex Pico [aut, cre] (<https://orcid.org/0000-0001-5706-2163>), Tanja Muetze [aut], Paul Shannon [aut], Ruth Isserlin [ctb], Shraddha Pai [ctb], Julia Gustavsen [ctb], Georgi Kolishovski [ctb]
Initial release
2020-11-18

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