Plot DNA sequence motif
Plot position weight matrix or position frequency matrix for different DNA sequence motifs.
MotifPlot(object, motifs, assay = NULL, use.names = TRUE, ...)
object |
A Seurat object |
motifs |
A list of motifs to plot |
assay |
Name of the assay to use |
use.names |
Use motif names stored in the motif object |
... |
Additional parameters passed to |
Returns a ggplot object
motif.obj <- Seurat::GetAssayData(atac_small, slot = "motifs") MotifPlot(atac_small, motifs = head(colnames(motif.obj)))
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